PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G196500.2
Common NameB456_004G196500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 324aa    MW: 35134.4 Da    PI: 7.1873
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G196500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-0891132647
                         HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +eE+  ++ + ++lG+g+W+ I+r     Rt+ q+ s+ qky
  Gorai.004G196500.2  91 EEEHRMFLLGLQKLGKGDWRGISRNYVISRTPTQVASHAQKY 132
                         7**************************89************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.105.6E-4321IPR001878Zinc finger, CCHC-type
SMARTSM007171.3E-485135IPR001005SANT/Myb domain
PROSITE profilePS5129412.26885137IPR017930Myb domain
TIGRFAMsTIGR015573.8E-1590136IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.4E-791131IPR009057Homeodomain-like
PfamPF002495.9E-791132IPR001005SANT/Myb domain
CDDcd001676.06E-691133No hitNo description
SuperFamilySSF466895.13E-1291138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTRRCSHCSH NGHNSRTCPN RGVKLFGVRL TDGSIRKSAS MGNLSQYSGS NSGAHNGNGS  60
GSPGEGPDHT DGYASEDFVP GSSSSRERKK EEEHRMFLLG LQKLGKGDWR GISRNYVISR  120
TPTQVASHAQ KYFIRQSNVS RRKRRSSLFD IVADESSDTP MASQDLFSAN HPHAETQSND  180
QLSIPPTLDE EDKSMDSNNS NDGETVPPKS ESSQPCYPVV YPTYFPPFFP YSLPYWMGYD  240
TEPTKKDTHE VVKPTAVHSK SPINVDELVG MSKLSLGESI GDSGSSSLSL KLDGSSRQSA  300
FHANPASSGN SNMDSSGNPI HAV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475875.10.0PREDICTED: myb-like protein J
TrEMBLA0A0D2S2S40.0A0A0D2S2S4_G
STRINGPOPTR_0001s15510.11e-170(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-91MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]